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<article article-type="research-article" dtd-version="1.2" xml:lang="en" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id journal-id-type="issn">0000-0000</journal-id>
<journal-title-group>
<journal-title>Communications in Prolactin Research</journal-title>
</journal-title-group>
<issn pub-type="epub">0000-0000</issn>
<publisher>
<publisher-name>Yellow Thistle Publishing</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.63701/cpr.3</article-id>
<article-categories>
<subj-group>
<subject>Data report</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Sequencing Report of a Monoclonal Vasoinhibin Antibody</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Triebel</surname>
<given-names>Jakob</given-names>
</name>
<role>Editor-in-Chief</role>
<email>eic_cpr@protonmail.com</email>
<xref ref-type="aff" rid="aff-1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bertsch</surname>
<given-names>Thomas</given-names>
</name>
<xref ref-type="aff" rid="aff-1">1</xref>
</contrib>
</contrib-group>
<aff id="aff-1"><label>1</label>Institute for Clinical Chemistry, Laboratory Medicine and Transfusion Medicine, General Hospital Nuremberg &amp; Paracelsus Medical University, Nuremberg, Germany</aff>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2025-06-09">
<day>09</day>
<month>06</month>
<year>2025</year>
</pub-date>
<pub-date pub-type="collection">
<year>2025</year>
</pub-date>
<fpage>1</fpage>
<lpage>3</lpage>
<permissions>
<copyright-statement>Copyright: &#x00A9; 2025 J. Triebel, T. Bertsch</copyright-statement>
<copyright-year>2025</copyright-year>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by-nc/4.0/">
<license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International License (<uri xlink:href="http://creativecommons.org/licenses/by-nc/4.0/">http://creativecommons.org/licenses/by-nc/4.0/</uri>), permitting all non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>
<self-uri xlink:href="https://www.communications-in-prolactin-research.com/articles/10.63701/cpr.3/"/>
<abstract>
<sec>
<title>Background:</title>
<p>Vasoinhibin is an antiangiogenic fragment of the pituitary hormone prolactin which is of interest in diseases of the eye, the heart, and pregnancy complications. This is the first report of the sequence of a monoclonal antibody against vasoinhibin.</p>
</sec>
<sec>
<title>Methods:</title>
<p>Whole transcriptome shotgun sequencing of a hybridoma cell culture producing a monoclonal anti-vasoinhibin antibody was performed and the protein sequences of the complementarity determining regions were determined by Kabat, IMGT and Chotia definitions.</p>
</sec>
<sec>
<title>Results:</title>
<p>A mouse IgM-kappa antibody was identified, and the complete protein sequences were determined. The complementarity determining regions were identified according to Kabat, IMGT, and Chotia definitions.</p>
</sec>
<sec>
<title>Conclusions:</title>
<p>The sequences of the antibody can be used for its recombinant production and antibody engineering.</p>
</sec>
</abstract>
<kwd-group>
<kwd>16 K PRL</kwd>
<kwd>16-kDa PRL</kwd>
<kwd>prolactin</kwd>
<kwd>vasoinhibin</kwd>
<kwd>monoclonal antibody</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec>
<title>Introduction</title>
<p>Vasoinhibin, an antiangiogenic fragment of the pituitary hormone prolactin (PRL), is of interest in the context of proliferative retinopathies (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B2">2</xref>), retinopathy of prematurity (<xref ref-type="bibr" rid="B3">3</xref>), peripartum cardiomyopathy (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B5">5</xref>) and preeclampsia (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B7">7</xref>). Vasoinhibin has also been referred to as 16 K PRL or 16-kDa PRL (<xref ref-type="bibr" rid="B8">8</xref>). Monoclonal antibodies against vasoinhibin without cross-reactivity to PRL have been generated recently and have been shown to be useful for immunoneutralization and employment in a sandwich ELISA (<xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B9">9</xref>). The present study reports the full protein sequence of a monoclonal anti-vasoinhibin antibody which can be used for the recombinant production of the antibody (subject to licensing) and antibody engineering procedures. The vi-mab (monoclonal anti-vasoinhibin antibody), produced by the hybridoma technique, is commercially available at Davids Biotechnologie GmbH (Regensburg, Germany).</p>
</sec>
<sec>
<title>Materials and Methods</title>
<p>Sequencing of hybridoma cells expressing a vi-mab, generated as reported earlier (<xref ref-type="bibr" rid="B9">9</xref>), was performed by whole transcriptome shotgun sequencing (RNA-Seq). This is a proprietary approach to antibody sequencing developed exclusively at Absolute Antibody (Oxford, UK). Total RNA was extracted from cells and a barcoded cDNA library generated through RT-PCR using a random hexamer. Next Generation Sequencing was performed on an Illumina HiSeq sequencer. Contigs were assembled using a proprietary approach and data were mined for antibody sequences identifying all viable antibody sequences (i.e. those not containing stop codons). Variable heavy and variable light domains were identified separately and relative abundance of each identified gene was reported in transcripts per million (TPM). The species and isotype of the identified antibody genes were confirmed. Sequences were compared with known aberrant (i.e. non-functional) antibody genes that are present in many hybridomas and these genes were removed from analysis. For each chain the variable domain is reported along with the constant domain. The heavy chain and light chain type was identified based on the sequence of the constant domain. For each heavy and light chain two measurements of abundance are reported. TPM (transcripts per million) is an abundance measurement from next generation sequencing which scores the relative abundance of each gene in the whole transciptome pool. The percent column converts the TPM into a percentage antibody gene abundance. This enables simple identification of high and low abundance antibody genes. The data is automatically filtered to only report antibody genes with an abundance of greater than 1%. The complementarity determining regions (CDRs) have been automatically identified on a &#8216;CDR identification&#8217; worksheet using Excel formulas working to the Kabat, IMGT and Chotia definition for CDRs. CDR identification was only performed for the primary VH and VL sequences.</p>
</sec>
<sec>
<title>Results</title>
<p>The complete sequencing of the primary heavy and light chain demonstrated the protein sequence of a HC and LC of a mouse IgM-kappa antibody (<xref ref-type="table" rid="T1">Table 1</xref>). The CDRs were determined according to Kabat, IMGT and Chotia and constitute the sequences presented in <xref ref-type="table" rid="T2">Table 2</xref>.</p>
<table-wrap id="T1">
<label>Table 1</label>
<caption>
<p>Protein sequences of HC and LC variable and constant regions.</p>
</caption>
<table>
<tbody>
<tr>
<td align="left" valign="top">Protein sequence</td>
<td align="left" valign="top">TPM<sup>1</sup></td>
<td align="left" valign="top">%<sup>2</sup></td>
</tr>
<tr>
<td align="left" valign="top">Primary HC sequence, Mouse IgM, variable:<break/>EVKLVESGGGLVQPGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGY<break/>TTEYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDRGYYDYWGQGTTLTVSS</td>
<td align="left" valign="top" rowspan="2">16294.85</td>
<td align="left" valign="top" rowspan="2">6.42</td>
</tr>
<tr>
<td align="left" valign="top">Primary HC sequence, Mouse IgM, constant:<break/>ESQSFPNVFPLVSCESPLSDKNLVAMGCLARDFLPSTISFTWNYQNNTEVIQGIR<break/>TFPTLRTGGKYLATSQVLLSPKSILEGSDEYLVCKIHYGGKNRDLHVPIPAVAE<break/>MNPNVNVFVPPRDGFSGPAPRKSKLICEATNFTPKPITVSWLKDGKLVESGFTT<break/>DPVTIENKGSTPQTYKVISTLTISEIDWLNLNVYTCRVDHRGLTFLKNVSSTCAA<break/>SPSTDILTFTIPPSFADIFLSKSANLTCLVSNLATYETLNISWASQSGEPLETKIKIM<break/>ESHPNGTFSAKGVASVCVEDWNNRKEFVCTVTHRDLPSPQKKFISKPNEVHKH<break/>PPAVYLLPPAREQLNLRESATVTCLVKGFSPADISVQWLQR<break/>GQLLPQEKYVTSAPMPEPGAPGFYFTHSILTV<break/>TEEEWNSGETYTCVVGHEALPHLVTERTVDKSTGKPTLYNVSLIMSDTGGTCY</td>
</tr>
<tr>
<td align="left" valign="top">Primary LC sequence, Mouse kappa, variable:<break/>DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIY<break/>KVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPWTFGGGTK<break/>LEIK</td>
<td align="left" valign="top" rowspan="2">237588.64</td>
<td align="left" valign="top" rowspan="2">93.58</td>
</tr>
<tr>
<td align="left" valign="top">Primary LC sequence, Mouse kappa, constant:<break/>RADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN<break/>SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><sup>1</sup>transcripts per million; <sup>2</sup>percentage antibody gene abundance.</p></fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T2">
<label>Table 2</label>
<caption>
<p>CDRs of the vi-mab according to Kabat, IMGT and Chotia.</p>
</caption>
<table>
<tbody>
<tr>
<td align="left" valign="top"></td>
<td align="left" valign="top"><bold>Kabat</bold></td>
<td align="left" valign="top"><bold>IMGT</bold></td>
<td align="left" valign="top"><bold>Chothia</bold></td>
</tr>
<tr>
<td align="left" valign="top">CDR-H1</td>
<td align="left" valign="top">DYYMS</td>
<td align="left" valign="top">GFTFTDYY</td>
<td align="left" valign="top">GFTFTDY</td>
</tr>
<tr>
<td align="left" valign="top">CDR-H2</td>
<td align="left" valign="top">FIRNKANGYTTEYSASVKG</td>
<td align="left" valign="top">IRNKANGYTT</td>
<td align="left" valign="top">RNKANGYT</td>
</tr>
<tr>
<td align="left" valign="top">CDR-H3</td>
<td align="left" valign="top">DRGYYDY</td>
<td align="left" valign="top">ARDRGYYDY</td>
<td align="left" valign="top">DRGYYDY</td>
</tr>
<tr>
<td align="left" valign="top">CDR-L1</td>
<td align="left" valign="top">RSSQSLVHSNGNTYLH</td>
<td align="left" valign="top">QSLVHSNGNTY</td>
<td align="left" valign="top">RSSQSLVHSNGNTYLH</td>
</tr>
<tr>
<td align="left" valign="top">CDR-L2</td>
<td align="left" valign="top">KVSNRFS</td>
<td align="left" valign="top">KVS</td>
<td align="left" valign="top">KVSNRFS</td>
</tr>
<tr>
<td align="left" valign="top">CDR-L3</td>
<td align="left" valign="top">SQSTHVPWT</td>
<td align="left" valign="top">SQSTHVPWT</td>
<td align="left" valign="top">SQSTHVPWT</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec>
<title>Discussion</title>
<p>The vi-mab, the sequence of which is shown here, is the first vasoinhibin-specific monoclonal antibody reported. The antibody originates from a mouse, which was injected with an immunizing peptide comprising amino acids 40&#8211;58 of mature human PRL (FDKRYTHGRGFITKAINSC) and subsequent monoclonal antibody production by the hybridoma technique. The sequences of the antibody can be used for its recombinant production and antibody engineering, such as species switch, isotype switch, subtype switch, reformatting to scFv, Fab, engineered Fc, or bispecificity.</p>
<p>The antibody has been tested in a sandwich ELISA to determine vasoinhibin concentrations in aqueous solutions and human serum (<xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B10">10</xref>). A recommended concentration for coating a microplate is 4 &#181;g/ml. The antibody is suitable for neutralizing the antiangiogenic activity of vasoinhibin (<xref ref-type="bibr" rid="B7">7</xref>); this feature is expected as the immunizing peptide includes the HGR-motif, which is the antiangiogenic determinant of vasoinhibin (<xref ref-type="bibr" rid="B11">11</xref>).</p>
</sec>
<sec>
<title>Review Board Statement</title>
<p>The animal studies have been registered, reviewed and approved in 2019 by the government of Lower Franconia in W&#252;rzburg, Germany.</p>
</sec>
</body>
<back>
<sec>
<title>Abbreviations</title>
<p>vi-mab, monoclonal anti-vasoinhibin antibody; CDRs, complementarity determining regions; HC, heavy chain; LC, light chain; VH, variable heavy; VL, variable light</p>
</sec>
<sec>
<title>Conflict of Interest Statement</title>
<p>The vi-mab and the sequence information are subjects of an international patent application filed by J.T. (international application no.: PCT/EP2024/073698) at the European Patent Office. The commercial production and distribution of the antibody has been licensed to Davids Biotechnologie GmbH, Regensburg, Germany (website: <ext-link ext-link-type="uri" xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="https://davids-science.de/">https://davids-science.de/</ext-link>).</p>
</sec>
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